About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1184480_1184938_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1184480 - 1184938
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TAACATTTAAGC
Flanking Amino Acid:
GFTQHHTACIDNNECATEIN
Intron Amino Acid Position:
2479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
87.7
0.85
0.7
85.6
29.1
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
49.1
-0
1.8
59.06
39.4

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950