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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1186098_1186306_R

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1186098 - 1186306
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATTT
Flanking Amino Acid:
TTDITGTLCIDLNECNESPK
Intron Amino Acid Position:
2399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
79.5
0.66
0.8
78.3
34.8
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
65.7
0.57
2
87.57
38.6

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950