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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1186433_1186905_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1186433 - 1186905
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAATT
5'SS Class:
major
3'SS Sequence:
CATTTAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CTTCATTTAACT
Flanking Amino Acid:
HGRGYMSNGADIDECKVIHD
Intron Amino Acid Position:
2357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
75.7
40.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.6
0.55
0.9
67.6
37.6
Minor 5ss
43.9
-0.7
3.2
66.8
44.1
Minor BPS
68.3
0.65
1.5
82.33
38.9

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950