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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1187113_1187770_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1187113 - 1187770
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATCAC
U12 Branch Point Sequence:
TGATGCATAATT
Flanking Amino Acid:
TVSDSQKECLDNREGYCFTE
Intron Amino Acid Position:
2288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.4
37.9
Major BPS
65.7
0.39
1.1
67.9
37.7
Major PPT
83.1
0.75
0.9
74.1
41
Minor 5ss
38.3
-1.3
3
51.1
45.2
Minor BPS
53.6
0.19
2
74.76
41.8

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950