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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1187897_1188482_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1187897 - 1188482
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGAAAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATAT
Flanking Amino Acid:
QRRPDGEGCVDENECQTKPG
Intron Amino Acid Position:
2246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
63.2
0.3
1.1
55.8
42.6
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
57
0.3
1.9
81.29
40.2

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950