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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11883868_11935712_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11883868 - 11935712
Intron Length:
51845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTCTCTCTACCC
Flanking Amino Acid:
QFLTYRYDDQTSRITRSDED
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
85.6
0.8
0.8
83.8
30.9
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
54.3
0.11
2
70.59
41.2

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564