About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1189166_1190907_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1189166 - 1190907
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTGCTCTGAATC
Flanking Amino Acid:
FEPGPMMTCEDVNECIQNPL
Intron Amino Acid Position:
2161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
60.9
0.25
1
51.7
41.9
Minor 5ss
31.1
-2.2
3.2
41.7
45
Minor BPS
53.9
0.1
1.5
59.96
39.6

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950