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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_118990_119989_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
118990 - 119989
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GAAAATTCAATT
Flanking Amino Acid:
VCLTGPPGPPGPAGIDGLPG
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
75.1
0.56
1
73.1
42.1
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
45.8
-0.2
1.6
57.32
38.8

Associated Gene:

Gene:
GLDN
Ensembl Gene ID:
ENSAPLG00000008175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008483
113675 - 132533
18859