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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1191028_1191380_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1191028 - 1191380
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TAATTGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTGCCTTGATT
Flanking Amino Acid:
GYILQETQCVDTDECAVGNP
Intron Amino Acid Position:
2121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.8
0.6
1
70
40.8
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
71.9
0.77
1.4
82.57
39.6

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950