About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1192319_1194690_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1192319 - 1194690
Intron Length:
2372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGTGTTGT
5'SS Class:
major
3'SS Sequence:
TTCCATTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTGCTTTGAACT
Flanking Amino Acid:
PCELCPEEADEAFRQICPFG
Intron Amino Acid Position:
2060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
0.9
69.3
37.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
77.6
0.62
0.8
72
32.3
Minor 5ss
42.7
-0.8
2.8
55
44.5
Minor BPS
56.9
0.3
1.4
70.66
40.2

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950