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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11935841_11938226_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11935841 - 11938226
Intron Length:
2386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCCAC
5'SS Class:
major
3'SS Sequence:
ATCTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCTTTTTTAATC
Flanking Amino Acid:
SYSLRRCLNGRNCEGRNIRY
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
64.4
41.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.7
0.76
0.8
81
35.7
Minor 5ss
34.5
-1.8
2.9
42.2
44.7
Minor BPS
68.5
0.56
1.2
68.66
38.1

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564