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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11963254_11973027_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11963254 - 11973027
Intron Length:
9774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
TTAATTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AGTTCTTTAATT
Flanking Amino Acid:
QAKAHVSPEKREETVIAVPH
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.9
40
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.2
0.59
0.9
69.7
41.2
Minor 5ss
40.9
-1
3.1
51.9
39.6
Minor BPS
80.3
1.03
1
87.05
32.1

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564