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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11973103_11980940_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11973103 - 11980940
Intron Length:
7838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGAGTG
5'SS Class:
major
3'SS Sequence:
GTTTCTTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCCTGTTTAAAT
Flanking Amino Acid:
RITLKGPAHLVIESKTLQGE
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
64.3
40
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.9
0.61
0.8
70
36.5
Minor 5ss
40.3
-1.1
3.4
52.3
45.9
Minor BPS
56.3
0.28
1.9
72.3
45

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564