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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1197903_1198307_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1197903 - 1198307
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
AATGTTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATCTTTCAATG
Flanking Amino Acid:
FILSHNNDCIDVDECASGNG
Intron Amino Acid Position:
1918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.2
0.48
1
67.8
42.6
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
51.9
-0
1.5
57.75
38.2

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950