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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1198425_1199221_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1198425 - 1199221
Intron Length:
797

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
GAGATTAAAATT
Flanking Amino Acid:
KTNDDRTMCIDINECERDAC
Intron Amino Acid Position:
1879

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.3
1.16
0.7
93.2
21.3
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
84.8
0.78
0.7
80.9
24.3
Minor 5ss
29
-2.4
3.8
41.8
44.8
Minor BPS
41
-0.6
1.7
50.68
37.6

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950