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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11985625_11987257_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11985625 - 11987257
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTATG
5'SS Class:
major
3'SS Sequence:
ATTTTGTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTGTTGACA
Flanking Amino Acid:
KECNMDPCPSSDGFKEIMPY
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
75.6
40
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.6
0.6
1
72.7
41.8
Minor 5ss
41.8
-0.9
2.5
51.4
45.2
Minor BPS
60.7
0.33
2.1
75.95
35.1

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564