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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11991792_11992690_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11991792 - 11992690
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
AGATGATTACAT
Flanking Amino Acid:
PKWVAMEWSQCTVTCGRGLR
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
73.9
0.59
1
81
30.2
Major PPT
83.1
0.75
0.8
77.8
31
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
41.9
-0.5
2.2
58.8
43.5

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564