Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_11994357_12001202_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11994357 - 12001202

Intron Length:

6846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TGATCATTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTAAATTTAAAT

Flanking Amino Acid:

EETRTVSEEPTFIPEPWSPC

Intron Amino Acid Position:

557

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

1.2

80.7

33.8

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

76.8

0.6

0.9

70.1

40.1

Minor 5ss

37.4

-1.4

2.6

43.1

36.9

Minor BPS

58.9

0.36

1.6

76.29

39.5

Associated Gene:

Gene:

ADAMTSL3

Ensembl Gene ID:

ENSAPLG00000011192

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011664

11882963 - 12041526

158564