Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_120098_122164_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

120098 - 122164

Intron Length:

2067

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATTTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGGTACTGAAAC

Flanking Amino Acid:

PGVNGKRGKIGMPGQKGDQG

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

82.4

30.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.4

0.86

0.7

82.1

34.6

Minor 5ss

58.1

0.27

2.3

39.6

Minor BPS

51.1

0.01

1.8

62.96

41.6

Associated Gene:

Gene:

GLDN

Ensembl Gene ID:

ENSAPLG00000008175

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008483

113675 - 132533

18859