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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12010105_12010787_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12010105 - 12010787
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACTG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
ACATACATACAG
Flanking Amino Acid:
PVWHVEEWQQCSRTCGGGIQ
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
68.1
42.8
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
81.3
0.7
0.7
80.7
31.3
Minor 5ss
41.7
-0.9
3.1
56
48.1
Minor BPS
39.9
-0.9
2
42.11
42

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564