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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12031186_12032784_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12031186 - 12032784
Intron Length:
1599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGGTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTGGTTCACA
Flanking Amino Acid:
AEAASVLHLTEQRYTENYTP
Intron Amino Acid Position:
1379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.1
0.56
1
68.1
42.3
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
45.8
-0.3
2.7
67.6
44.9

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564