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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12036241_12038800_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12036241 - 12038800
Intron Length:
2560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCC
5'SS Class:
major
3'SS Sequence:
CTGCATCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTGCTGTAAAT
Flanking Amino Acid:
QSCNIDDCPARWVTGPWSEC
Intron Amino Acid Position:
1480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.1
36.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
68.8
0.42
0.9
62.5
34.3
Minor 5ss
44.5
-0.6
2.9
60
44.7
Minor BPS
49.4
0.04
2.2
72.3
45

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564