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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12039006_12039805_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12039006 - 12039805
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTTCCTCTCACC
Flanking Amino Acid:
SSGTTQTKGQCSGRCIGRPT
Intron Amino Acid Position:
1549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
82.9
0.74
0.7
81.3
30.7
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
52.1
0.05
2.1
72.58
38.5

Associated Gene:

Gene:
ADAMTSL3
Ensembl Gene ID:
ENSAPLG00000011192
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011664
11882963 - 12041526
158564