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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12047631_12048621_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12047631 - 12048621
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTGCCTTAAAG
Flanking Amino Acid:
GKLDTIPTYQDDYRSWEVQR
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.5
0.57
1
75.3
33.6
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
73.1
0.59
1.6
76.73
40.6

Associated Gene:

Gene:
SAXO2
Ensembl Gene ID:
ENSAPLG00000011186
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011637
12046517 - 12049367
2851