About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12050250_12054830_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12050250 - 12054830
Intron Length:
4581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
GTGTTTTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGTGTTTTACCC
Flanking Amino Acid:
PRCLCAICTCGRHRCPHKPT
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
73.1
0.52
1
65.9
44.5
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
54.6
0.12
1.7
65.82
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022974
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039659
12050066 - 12054871
4806