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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1205356_1206434_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1205356 - 1206434
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
AATCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATGAATT
Flanking Amino Acid:
FIDIYTGLPVDIDECREIPG
Intron Amino Acid Position:
1754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.4
0.68
0.9
74
35.7
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
62.1
0.46
1.8
83.38
37.1

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950