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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12056137_12056314_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12056137 - 12056314
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
ACAGATTTATCT
Flanking Amino Acid:
GIISSRLAGKLRYLDSREDE
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
89.1
0.88
0.7
88.2
29.1
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
46.4
-0.2
1.8
59.67
43.8

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505