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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12058126_12058745_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12058126 - 12058745
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAATAA
5'SS Class:
major
3'SS Sequence:
ATTTTCTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
VDAVEGVCPQTQAVLRQAWL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
72.4
27.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.9
0.65
0.8
79.3
33.3
Minor 5ss
31.2
-2.2
3.1
37.8
47
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505