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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12058884_12059682_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12058884 - 12059682
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATA
5'SS Class:
strong_major
3'SS Sequence:
TACCCTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATATACCC
Flanking Amino Acid:
YLHLKNILEQINAVTGTLFT
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
81.6
31.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70
0.45
0.8
64.8
30.4
Minor 5ss
45.5
-0.5
2.5
60.1
44.4
Minor BPS
50.1
-0
2
72.13
38.9

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505