About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12059898_12062387_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12059898 - 12062387
Intron Length:
2490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CTTTTATCAAGT
Flanking Amino Acid:
FASAIDGWGFGIEHFAKLYS
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
81.8
38.5
Major BPS
79
0.72
1
80.3
31.7
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
38.9
-1.2
2.8
43.3
43.8
Minor BPS
48.8
-0
2.1
72.73
44.2

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505