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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12062512_12063399_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12062512 - 12063399
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAG
5'SS Class:
major
3'SS Sequence:
TTTGTTCTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGAAAATTAACT
Flanking Amino Acid:
KAKKIMKGDQSKGKKPLFVQ
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.5
45.8
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
79.2
0.66
1
73.5
41.8
Minor 5ss
28.7
-2.4
3.4
37.1
47.5
Minor BPS
54.4
0.22
1.8
73.56
42

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505