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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12063477_12063603_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12063477 - 12063603
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTTCCCGTACA
Flanking Amino Acid:
IWSLYEAVMKRDKEKIEKII
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.1
0.72
0.9
76.9
31.9
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
54.9
0.15
2.1
77.57
38.5

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505