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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12064303_12067269_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12064303 - 12067269
Intron Length:
2967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATGTTTGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGCAAATAACT
Flanking Amino Acid:
LPPETQELKSAFLKCSSEGT
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.9
0.65
1
77.2
41.6
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
46.3
-0.2
2
67.8
41.9

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505