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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1206507_1207427_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1206507 - 1207427
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
AATACTGTAATT
Flanking Amino Acid:
PCEQCPIPSTDEFSTLCGSQ
Intron Amino Acid Position:
1730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
79.3
37.1
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
78.6
0.64
0.8
73.8
29.5
Minor 5ss
45.5
-0.5
3.1
67.3
43.8
Minor BPS
52.6
0.16
2
72.07
39.2

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950