About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12067370_12076941_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12067370 - 12076941
Intron Length:
9572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AAATGCAATTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AATACTTTAAAA
Flanking Amino Acid:
DAKALPHNKPRPLTQEEIAQ
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
54.5
0.1
1
49.8
43.1
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
64.4
0.45
1.4
69.42
36

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505