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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1207587_1208232_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1207587 - 1208232
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
MQVNGGNNCMDMRRSLCYRN
Intron Amino Acid Position:
1677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.8
0.76
0.8
79.2
32.7
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950