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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12077094_12077786_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12077094 - 12077786
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTAACTGATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTCTAACT
Flanking Amino Acid:
EVTGNTGDTKGEEQQLTDQT
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
82.1
30.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
60.4
0.23
1
59.5
41.3
Minor 5ss
42.8
-0.8
2.7
59.2
45.4
Minor BPS
73.3
0.81
1.6
92.08
30.2

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505