Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12080105_12105566_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12080105 - 12105566

Intron Length:

25462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

CAATTTCTATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTATAT

U12 Branch Point Sequence:

TTTCCCTGCAAT

Flanking Amino Acid:

LEEVPAGNVLGIGGLQDVVL

Intron Amino Acid Position:

587

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

75.5

40.6

Major BPS

57.9

0.2

1.1

40.4

Major PPT

68.1

0.41

0.9

67.5

38.5

Minor 5ss

37.5

-1.4

3.3

49.3

46.4

Minor BPS

53.4

0.19

2.1

80.15

Associated Gene:

Gene:

EFL1

Ensembl Gene ID:

ENSAPLG00000011147

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011632

12055306 - 12124810

69505