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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1210041_1210382_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1210041 - 1210382
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
GCTATCTTAAGT
Flanking Amino Acid:
PCEQCPPVNTTEYKVLCPGG
Intron Amino Acid Position:
1571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
60
0.39
1.7
72.79
44.1

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950