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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12107743_12109391_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12107743 - 12109391
Intron Length:
1649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATCTTAAAAC
Flanking Amino Acid:
LQRCLDDLKERFAKIEISVS
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
76.6
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.6
0.78
0.7
79.9
32.3
Minor 5ss
31.6
-2.1
2.8
41.6
44.4
Minor BPS
56
0.17
1.7
65.7
39.6

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505