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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12110393_12114222_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12110393 - 12114222
Intron Length:
3830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GATGTCTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
GCTCACTGAAAT
Flanking Amino Acid:
CEIMATAEVLGRVYAVLSKR
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
72.4
0.5
0.9
65.6
40.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
48.8
-0
1.8
66.14
43.3

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505