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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_12114408_12124621_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12114408 - 12124621
Intron Length:
10214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CTTACATTACTT
Flanking Amino Acid:
SPQLVFSHWEIISSDPFWVP
Intron Amino Acid Position:
1076

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
88.5
0.87
0.6
83.5
24.9
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
52.2
0.15
1.9
73.63
43.4

Associated Gene:

Gene:
EFL1
Ensembl Gene ID:
ENSAPLG00000011147
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011632
12055306 - 12124810
69505