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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1213160_1214783_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1213160 - 1214783
Intron Length:
1624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CTTTCTCTATCA
Flanking Amino Acid:
LPSPDGKACEDIDECSLPNI
Intron Amino Acid Position:
1434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
82.3
0.73
0.8
82
28.4
Minor 5ss
38.8
-1.3
3
53.4
43.7
Minor BPS
55.1
0.16
2
71.61
40.9

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950