About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1214955_1215932_R

Intron Information:

Intron Rank:
33
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1214955 - 1215932
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGTTTTC
5'SS Class:
weak_major
3'SS Sequence:
AAATGTTGTTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
GTTAGCTGAAAC
Flanking Amino Acid:
SDQHGCFINNKNHVYCKSPI
Intron Amino Acid Position:
1377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.1
0.19
1.1
60.1
40
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
47.7
-0.1
1.8
54.8
48.8
Minor 5ss
45.6
-0.5
3.1
66.3
39.1
Minor BPS
48
-0.1
2
62.64
41.9

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950