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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1215949_1217497_R

Intron Information:

Intron Rank:
32
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1215949 - 1217497
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCTGTGTG
5'SS Class:
major
3'SS Sequence:
TGCAGATTAGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
AGATTTTCAGCT
Flanking Amino Acid:
HLFVRSDQHGCFINNKNHVY
Intron Amino Acid Position:
1372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.4
59.7
45.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
57.6
0.17
1
51.9
41.7
Minor 5ss
37.4
-1.4
3.1
40.9
45.4
Minor BPS
48
-0
1.7
64.05
40.2

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950