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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1217665_1225953_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1217665 - 1225953
Intron Length:
8289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AGCTCTTCAAAT
Flanking Amino Acid:
SGKKGTTGCTDINECEIGAH
Intron Amino Acid Position:
1316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
77.3
0.68
1
81.5
27
Major PPT
88.5
0.87
0.7
83.2
31.9
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
54.6
0.22
1.7
68.79
41.8

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950