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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_122312_123045_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122312 - 123045
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTACTTCATT
Flanking Amino Acid:
GDANNDVVLEGAKGEPGPPG
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77
0.61
0.9
73.7
35.4
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
60.2
0.4
2
80.62
41.6

Associated Gene:

Gene:
GLDN
Ensembl Gene ID:
ENSAPLG00000008175
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008483
113675 - 132533
18859