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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1226080_1226797_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1226080 - 1226797
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAAATCTTAAAT
Flanking Amino Acid:
MASEDMKTCVDVNECDLHPN
Intron Amino Acid Position:
1274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.8
0.74
0.8
81.2
36.5
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
65.2
0.56
1.4
76.32
39.3

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950