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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1226924_1230824_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1226924 - 1230824
Intron Length:
3901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
CATACCTAAAGC
Flanking Amino Acid:
ALMPDHRTCTDIDECEDNPN
Intron Amino Acid Position:
1232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.7
40
Major BPS
75.8
0.64
1
65.8
41
Major PPT
86.4
0.82
0.6
82.4
22.2
Minor 5ss
28.7
-2.4
3.5
34.2
43.1
Minor BPS
48.9
-0.1
2
59.95
45

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950