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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1231577_1232884_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1231577 - 1232884
Intron Length:
1308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTAAAA
U12 Branch Point Sequence:
TTCTTCTCACAG
Flanking Amino Acid:
SGFMMMKNCMDIDECQRNPL
Intron Amino Acid Position:
1107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
35
Major BPS
49.6
-0
1.1
57
36.4
Major PPT
84.4
0.78
0.7
79.5
26.1
Minor 5ss
56.3
0.21
2.4
67
44.2
Minor BPS
47
-0.3
2
56.14
45.3

Associated Gene:

Gene:
FBN1
Ensembl Gene ID:
ENSAPLG00000005565
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006009
1177298 - 1339247
161950